rs223892345 SNP Detail

Summary

• ID
  rs223892345
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34143502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATCATT GATGTAATTA
  CCATGTTTCA TTTGTGCATG CATTTTATTG GGGATGGGAG GTTGGAATAA TTTATCCAAA
  TCTAATGGTA TTATTTCATA GGCTAATCCA GTTTGTATTT GAGTTAAAGA TCCCAGAGTG
  TAGTAATTAA TTGCAGCGTT TGGTTTTTCT TAATTAAAAG TAGTCCTCTA TTAATATAGT
  R
  TGAAATATCA AAATTTAGGA TTTAAGTTTA AGGTCTAATG GCTATTTTAA AGTTTTTCTG
  TAAATTCTTT GCACAAACTA GAATTGGAAT TGCTTTCAAA AGACTTGGGG AATGAAAATA
  TGTCATGTGT AAGATGCACT GAGTGTTGTA AATAAAACAG ACCATTTTTG TTTTGTTTAA
  ATTGTTACAT TCTCTGTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324918888	CHEV_15_34073111	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223892345					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34143502 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	within coordinates
Tssr131026	transcription start site region 131026	826 bp downstream
Tssr131027	transcription start site region 131027	391 bp downstream
Tssr131028	transcription start site region 131028	252 bp downstream
Tssr131029	transcription start site region 131029	565 bp upstream