rs223895554 SNP Detail

Summary

• ID
  rs223895554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:56928684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAATTACAG TCCAGCATAT AAAAGAACAC
  ACTCGCTTCT TTTTACTCAC AACAGCAGGT AAATGTGATC AGTAAACAAC CTTGAAGCTG
  CATGATTCTT TTGATTTTTA TGTTCAAGCA TTTTAACAAT CCAATTTCAA AAAGAAAACT
  Y
  GCAGAGGACA CTTTAAGAAA AGAAAGCCTT CTGAGCCACA CCATCACATC ATGTGATGCG
  GAGTTATTTA CCTTCTCTTA CATGGGAGTA AGTATTAATA CTGAAAAGCA AATACCCTAC
  CAGAATAAAA AGGACTTAAA GAATTTGAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319733287	CHEV_1_56946369	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223895554					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:56928684 () rs orientation: forward

Symbol	Name	Function Class
Gm51624	predicted gene, 51624	within coordinates
Satb2	special AT-rich sequence binding protein 2	within coordinates