rs223899181 SNP Detail

Summary

• ID
  rs223899181
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87753729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCCCCG CCCATCCCCG
  CAGCGCCGCG GGCCGCCCAG ACCTCCGCAG TCCTGCAGGT GCCAGCGCAG CAGCTGGGGC
  GCGAGCCGAG CCGAGCCGCG TAGGGCGGCG GCTCGGGGCC CCGCGCGCTC ACCCCACCCG
  ACCCCCGCGG CGGGGGTCCC CGCACGGGCT GGACCCACGG GGCGCGCCCC CGGCCCGGCC
  S
  GGCCCGGCCT CGCGGGGATG CGGGCTAACG GCGCCCGCTC GCCTCGGGGC CCCGCGCTCC
  TCCCCACCCC ACCCCCCGCG CATGGCGGCC GGGCGGACAA AGGCGCTTCC TGGCGCCCGC
  GCTCGCTCGG CGGTGGCCGT TGGCGGTTTG AATCCGGCCC CCGGGGCTGA CCTTTGGCGC
  CGCCTCGGCC GCAGCCCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399364113	MGP_WTSI_17_87845641	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223899181					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399364113	MGP_WTSI_17_87845641	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87753729 () rs orientation: forward

Symbol	Name	Function Class
Calm2	calmodulin 2	within coordinates
Cpgi9626	CpG island 9626	within coordinates
Gm65472	predicted gene, 65472	302 bp upstream
Rr370330	regulatory region 370330	433 bp upstream
Rr370331	regulatory region 370331	757 bp upstream
Rr393074	regulatory region 393074	within coordinates
Rr532694	regulatory region 532694	254 bp distal
Rr532695	regulatory region 532695	within coordinates
Rr532696	regulatory region 532696	313 bp proximal
Rr532697	regulatory region 532697	545 bp proximal
Tssr146185	transcription start site region 146185	151 bp downstream
Tssr146186	transcription start site region 146186	376 bp upstream
Tssr146187	transcription start site region 146187	924 bp upstream
Tssr149773	transcription start site region 149773	553 bp downstream