rs223901642 SNP Detail

Summary

• ID
  rs223901642
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57532109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGCTCC ACCCGGACCT
  CAAAACTGGG CAGCACTAGG ATGGGGTATG AAGACGATGG TGTTGGCATG GCTGCCAGGG
  CAGCATAAGC ACAAGGGCCT CACCTGCTGG ATGCCCCAAG ACTTACCGTA TTCCTTCACC
  TCAAACTCTG CGGAGAAGAT CTGCTTCGGC GCATGTTCGT AAAAGGCTCG GATCTTCCAC
  K
  GCCCCATGCT GCAAGAAGAT GAGGAATGTG GCAGAGCCTC CAAGAGCCTC TCCCCCATCT
  CTCCCCCCGG ACGGGGGAAT CCCGTTTTTT GGAGGCTCAG ATTTACTTGA CCAGTTCAGG
  AATGTTCCAA GACAAAGGCA AGATGCCGTG TTGGTTGTTG GAAGACAGAA TGTCTCTCTT
  GACAGGAATG CCATCGGGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398573206	MGP_WTSI_17_57364532	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223901642					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398573206	MGP_WTSI_17_57364532	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57532109 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	294 bp distal
Tssr145378	transcription start site region 145378	1974 bp downstream
Tssr145379	transcription start site region 145379	1899 bp downstream
Tssr145380	transcription start site region 145380	1854 bp downstream
Tssr145381	transcription start site region 145381	1800 bp downstream
Tssr145382	transcription start site region 145382	1246 bp downstream
Tssr145383	transcription start site region 145383	1169 bp downstream
Tssr145384	transcription start site region 145384	999 bp downstream
Tssr145385	transcription start site region 145385	140 bp upstream
Tssr145386	transcription start site region 145386	916 bp upstream
Tssr145387	transcription start site region 145387	1147 bp upstream
Tssr145388	transcription start site region 145388	1729 bp upstream
Tssr148947	transcription start site region 148947	1910 bp upstream
Tssr148948	transcription start site region 148948	1826 bp upstream
Tssr148949	transcription start site region 148949	1770 bp upstream
Tssr148950	transcription start site region 148950	1216 bp upstream
Tssr148951	transcription start site region 148951	1187 bp upstream
Tssr148952	transcription start site region 148952	1127 bp upstream
Tssr148953	transcription start site region 148953	946 bp upstream
Tssr148954	transcription start site region 148954	921 bp upstream
Tssr148955	transcription start site region 148955	776 bp upstream
Tssr148956	transcription start site region 148956	743 bp upstream
Tssr148957	transcription start site region 148957	157 bp upstream
Tssr148958	transcription start site region 148958	within coordinates
Tssr148959	transcription start site region 148959	154 bp downstream
Tssr148960	transcription start site region 148960	908 bp downstream
Tssr148961	transcription start site region 148961	945 bp downstream
Tssr148962	transcription start site region 148962	1091 bp downstream
Tssr148963	transcription start site region 148963	1143 bp downstream
Tssr148964	transcription start site region 148964	1176 bp downstream
Tssr148965	transcription start site region 148965	1687 bp downstream
Tssr148966	transcription start site region 148966	1704 bp downstream