CTCACCCCCG GGGAGGCGGG GCCGAGGAGC GGACACGCGC ATGCGCGCGC CCCGGGGCGG TCGCGGGCGG AGGGGGCGGC TCCTCGAGTG TTGGCTACCC AAAGGCCGAG CGGCAGGCGG GCGGCAGGTG CCGCGGCCGG GCGCCGCTGC CTCGTCGCGC GTCCCCGCGA TGAGCCTCGT CTCGCGGCCT GCCCCTGCCG S CTGCCGCTCC GCGCGGGCCT CACGGCGTGA CCCGGGCCTC GTGGCGTGGC GGGCCCCCGC GGCGCGACGC GGGCCCTGAG CGGGAGCGGC GGTCCCTCCC GCGGCCCCAG GCCTCGCCCG CCAGCGCTCC TCGATGTCTC CCCGGCGGGG AGGACGCTGC CTGCGACACC CGCCGAGCGG CGCCCCCCGG AGCGCCCCGC S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10SnJ |
CAST/EiJ |
CBA/J |
CZECHII/EiJ |
DBA/2J |
FVB/NJ |
JF1/MsJ |
LG/J |
LP/J |
MA/MyJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZO/HlLtJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RIIIS/J |
SJL/J |
SM/J |
SPRET/EiJ |
SWR/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss388394231 | MGP_WTSI_13_41701366 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | C | G | G |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10SnJ |
CAST/EiJ |
CBA/J |
CZECHII/EiJ |
DBA/2J |
FVB/NJ |
JF1/MsJ |
LG/J |
LP/J |
MA/MyJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZO/HlLtJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RIIIS/J |
SJL/J |
SM/J |
SPRET/EiJ |
SWR/J |
WSB/EiJ |
||||
rs223903315 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | C | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss388394231 | MGP_WTSI_13_41701366 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/G |
Location: Chr13:41759473 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi5501 | CpG island 5501 | within coordinates | ||||||
Gm32184 | predicted gene, 32184 | 241 bp upstream | ||||||
Rr281294 | regulatory region 281294 | within coordinates | ||||||
Tmem170b | transmembrane protein 170B | within coordinates | ||||||
Tssr119412 | transcription start site region 119412 | 134 bp downstream | ||||||
Tssr119413 | transcription start site region 119413 | 95 bp downstream | ||||||
Tssr119414 | transcription start site region 119414 | 68 bp downstream | ||||||
Tssr122210 | transcription start site region 122210 | 496 bp upstream | ||||||
Tssr122211 | transcription start site region 122211 | 452 bp upstream | ||||||
Tssr122212 | transcription start site region 122212 | 412 bp downstream | ||||||
Tssr122213 | transcription start site region 122213 | 1774 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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