rs223903315 SNP Detail

Summary

• ID
  rs223903315
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:41759473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCCCCG GGGAGGCGGG
  GCCGAGGAGC GGACACGCGC ATGCGCGCGC CCCGGGGCGG TCGCGGGCGG AGGGGGCGGC
  TCCTCGAGTG TTGGCTACCC AAAGGCCGAG CGGCAGGCGG GCGGCAGGTG CCGCGGCCGG
  GCGCCGCTGC CTCGTCGCGC GTCCCCGCGA TGAGCCTCGT CTCGCGGCCT GCCCCTGCCG
  S
  CTGCCGCTCC GCGCGGGCCT CACGGCGTGA CCCGGGCCTC GTGGCGTGGC GGGCCCCCGC
  GGCGCGACGC GGGCCCTGAG CGGGAGCGGC GGTCCCTCCC GCGGCCCCAG GCCTCGCCCG
  CCAGCGCTCC TCGATGTCTC CCCGGCGGGG AGGACGCTGC CTGCGACACC CGCCGAGCGG
  CGCCCCCCGG AGCGCCCCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss388394231	MGP_WTSI_13_41701366	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs223903315					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388394231	MGP_WTSI_13_41701366	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:41759473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5501	CpG island 5501	within coordinates
Gm32184	predicted gene, 32184	241 bp upstream
Rr281294	regulatory region 281294	within coordinates
Tmem170b	transmembrane protein 170B	within coordinates
Tssr119412	transcription start site region 119412	134 bp downstream
Tssr119413	transcription start site region 119413	95 bp downstream
Tssr119414	transcription start site region 119414	68 bp downstream
Tssr122210	transcription start site region 122210	496 bp upstream
Tssr122211	transcription start site region 122211	452 bp upstream
Tssr122212	transcription start site region 122212	412 bp downstream
Tssr122213	transcription start site region 122213	1774 bp downstream