rs223913510 SNP Detail

Summary

• ID
  rs223913510
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152624739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTTGCATG CTACACACAG GATGACCAAC
  AAGTCTGTGG GGCTTGTTTC CTCCTTTTCC TGCTTGACTA GACCTATGGC ATGCCAAGTC
  CTTTTTTTAT TATATAATAT CTCAAAAGCT TATAAAACTA CCACATTTTT TAGATTTACT
  W
  AAAAAAAAAA Tagataagat cttactagcc ctggctagcc tagaactcaa tacaaagctc
  gcctcaaact cacagacatc tgccagactt tattccgttc cccaactgct aggaataaag
  gcatatacca ccacacacaa ctTTTTATAT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320067879	CHEV_1_154596118	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223913510					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152624739 () rs orientation: forward

Symbol	Name	Function Class
Apobec4	apolipoprotein B mRNA editing enzyme catalytic polypeptide-like 4	1563 bp upstream
Gm28792	predicted gene 28792	within coordinates
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	within coordinates
Rr13092	regulatory region 13092	1939 bp distal
Rr31152	regulatory region 31152	462 bp proximal
Tssr9415	transcription start site region 9415	1535 bp upstream
Tssr9416	transcription start site region 9416	1539 bp upstream
Tssr9417	transcription start site region 9417	1566 bp upstream