rs223913725 SNP Detail

Summary

• ID
  rs223913725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46505055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAATAAAG AGAAATAAAA
  GAAATAATGA ATAAAAACAA GAGCACAGCC CTTGTGGAGG TCAGTGGGGG AGGGGCTGCC
  TTAGCTCTCA GTCCTTCCCT GGATCTTGGT AGAGCACCTT CCTACAGGGA GCACTTTATC
  TGAATCATGG ACTTCCTGTC TAGAGCACAC ACTGAAATCC AGTCTTCTAA ATAAGCATGG
  Y
  GCAGTCTTGC CCTGGCCTTG CCTCTCACCC CACTGGCCCT CTCAGGCCTA GAACCTTTTG
  ACGGTGGTCT GCACAGGGCT CTCTAAGTCT GCTGCCTCCA CTCTCCTGTC TTGATTTCTG
  TCCTCCTGGG TCTAGACACA ATCCCAGACC TGTAAATATC ACTTCTCAGA CACCAGCTAC
  ATCTGTCCTT CACCTTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402598372	MGP_WTSI_19_46591106	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223913725					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402598372	MGP_WTSI_19_46591106	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46505055 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	949 bp distal
Rr363443	regulatory region 363443	1145 bp proximal
Rr370520	regulatory region 370520	1431 bp upstream
Trim8	tripartite motif-containing 8	161 bp downstream
Tssr156776	transcription start site region 156776	1985 bp downstream
Tssr156777	transcription start site region 156777	1276 bp downstream
Tssr156778	transcription start site region 156778	854 bp downstream
Tssr156779	transcription start site region 156779	760 bp downstream
Tssr156780	transcription start site region 156780	437 bp downstream
Tssr156781	transcription start site region 156781	413 bp downstream
Tssr156782	transcription start site region 156782	307 bp downstream