rs223914770 SNP Detail

Summary

• ID
  rs223914770
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184582164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGAGCT CTGTGATCAG
  ACCAGTGAGG GCCTTCGCCA TAGTGAATGC CAGTCCTCTG CTCTCTGAGC TCACCATTAC
  CCAATATGTG CCCTGCCAGG ACGCCCTGTC CCAGTGGCTT TTAGCAGAGA AGCCTCCTAT
  CCGTCACCTT GGCAGACCCC CTTGTCTGCA GCAGTAGCTG ACGGGAGGCT GGGGACCACC
  R
  CTCGTCTATC TGCTTTGCTT TTCACTGTTC TTGGTTTAAA TGATGGGGAG AGAAGGAAAA
  CAGCAAGGAA GTGTTTCCTC ACTGAGCACT TGGCTTCAGG CAAGCTCCCT GCATCCCAGA
  CCTGCTGCAG GCAGGATGCT GGCATTAGTC TGTAACAGTG ACCGTACAGT CTACCTCACA
  GGCCCTAGTT TTAAACTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169894	CHEV_1_186673846	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223914770					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184582164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1164	CpG island 1164	1977 bp proximal
Gm34451	predicted gene, 34451	within coordinates
Rr372580	regulatory region 372580	within coordinates
Rr425307	regulatory region 425307	1151 bp proximal