rs223918125 SNP Detail

Summary

• ID
  rs223918125
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164175572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG TATGCAGGTA AGTGGATCAC
  C
  GGGTGAGGGG TTAGAAGCTA CACAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605473	CHEV_2_164159388	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223918125					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164175572 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	318 bp downstream
Tssr745	transcription start site region 745	275 bp downstream
Tssr746	transcription start site region 746	268 bp downstream
Tssr747	transcription start site region 747	255 bp upstream
Tssr748	transcription start site region 748	230 bp downstream
Tssr749	transcription start site region 749	193 bp downstream
Tssr750	transcription start site region 750	176 bp downstream
Tssr751	transcription start site region 751	124 bp downstream
Tssr752	transcription start site region 752	62 bp downstream
Tssr753	transcription start site region 753	52 bp downstream
Tssr754	transcription start site region 754	612 bp upstream
Tssr21562	transcription start site region 21562	916 bp downstream
Tssr21563	transcription start site region 21563	907 bp downstream
Tssr21564	transcription start site region 21564	876 bp downstream
Tssr21565	transcription start site region 21565	863 bp downstream
Tssr21566	transcription start site region 21566	852 bp downstream
Tssr21567	transcription start site region 21567	840 bp downstream
Tssr21568	transcription start site region 21568	831 bp downstream
Tssr21569	transcription start site region 21569	326 bp downstream
Tssr21570	transcription start site region 21570	284 bp downstream
Tssr21571	transcription start site region 21571	256 bp downstream
Tssr21572	transcription start site region 21572	242 bp downstream
Tssr21573	transcription start site region 21573	211 bp downstream
Tssr21574	transcription start site region 21574	149 bp downstream
Tssr21575	transcription start site region 21575	624 bp upstream
Tssr21576	transcription start site region 21576	640 bp upstream
Tssr21577	transcription start site region 21577	659 bp upstream
Tssr27433	transcription start site region 27433	296 bp upstream
Tssr27434	transcription start site region 27434	266 bp upstream
Tssr27435	transcription start site region 27435	241 bp upstream
Tssr27436	transcription start site region 27436	224 bp upstream
Tssr27437	transcription start site region 27437	183 bp upstream
Tssr27438	transcription start site region 27438	166 bp upstream
Tssr27439	transcription start site region 27439	161 bp upstream
Tssr27440	transcription start site region 27440	145 bp upstream
Tssr27441	transcription start site region 27441	96 bp upstream
Tssr27442	transcription start site region 27442	86 bp upstream
Tssr27443	transcription start site region 27443	27 bp upstream
Tssr27444	transcription start site region 27444	16 bp upstream
Tssr27445	transcription start site region 27445	597 bp downstream
Tssr27446	transcription start site region 27446	641 bp downstream
Tssr27447	transcription start site region 27447	736 bp downstream
Tssr27448	transcription start site region 27448	1350 bp downstream