rs223921124 SNP Detail

Summary

• ID
  rs223921124
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107429623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGAAAA AGTTAGAACC
  TTAGTTAGGC TCCTTGTTAG TAGGAATTCT ATTGAAACTT CAGTCAAGGT TGTTTTGAGT
  CAAGGATGCA GAGGCTAAAA CATGGAGTCC AGCCACACAC ACAATGAGTG GTCCTTCTGA
  CCTAGGAATT ACCAGCAAAC AGAACCACGC AGGACAATAT ATACCTTCCA GTCTCCTCGC
  R
  CCTACTTCTC CTCTCAGACT TGTTGACTCC GTTGTTGAAA GTGGACCTTA GGCATCCTGG
  TTTTTCTGTT TTGGTTTGGT TTTTTGGTTG TTTTGTTGTG TTTTAAGACA GGGTTTCACT
  CTGCAGCCCT GGCTTGCCTA GAACTCTCTA TGCAGACCAG GCTGTGACAA GCAACCCACC
  TGCCCCTGCC TCCCAAGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378850632	MGP_WTSI_9_107454755	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223921124					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378850632	MGP_WTSI_9_107454755	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107429623 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22292	CpG island 22292	374 bp distal
Cpgi22293	CpG island 22293	1454 bp proximal
Gm34106	predicted gene, 34106	1587 bp upstream
Gm68605	predicted gene, 68605	1086 bp downstream
Rassf1	Ras association (RalGDS/AF-6) domain family member 1	within coordinates
Rr368855	regulatory region 368855	1171 bp downstream
Tssr86984	transcription start site region 86984	1626 bp downstream
Tssr86985	transcription start site region 86985	984 bp downstream
Tssr86986	transcription start site region 86986	849 bp downstream
Tssr91394	transcription start site region 91394	1587 bp upstream
Tssr91395	transcription start site region 91395	1969 bp downstream
Zmynd10	zinc finger, MYND domain containing 10	1105 bp downstream