rs223923793 SNP Detail

Summary

• ID
  rs223923793
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3728109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATCTGTG ACTCTAGCAA
  CACTGTTGTT TTTCACTCCA GTCCGTTTCT GCTAGAAACT ACGCAGCCTG TGTACTGTCT
  GGAACATGTT GCACGCATGT GCTTTGAGAA GAACAGCATG CATAGCTGAC TAATTTCAAA
  AACAGCCTAT TTATAGTCCT TCAGAGTAAT TGTCAGACAC TTGGTCTGTG CGCTTTTGCT
  M
  ACGTCATGTG GATCAACATG GCTTTTTAAA TGGAGATAAA TTGTTTTTTA TGTGTGGGTG
  ATTCATTTGA TACTTCTCTA TAAATTCATA CCCCAACTGT GTCTCTGAAG TGTGTCACTG
  CAGTAATAGC CCAGGGAGGA GTTTTCAACA ATTAGCATTG GATTCAATAT GAGATGGTGC
  TTTAGAGAAC TTACAACTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320205093	CHEV_2_3644344	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223923793					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3728109 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	580 bp upstream
Rr396754	regulatory region 396754	within coordinates
Rr550942	regulatory region 550942	within coordinates
Tssr15911	transcription start site region 15911	102 bp upstream
Tssr22380	transcription start site region 22380	324 bp upstream
Tssr22381	transcription start site region 22381	264 bp upstream