rs223924854 SNP Detail

Summary

• ID
  rs223924854
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93870146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACTTTGA AGTTCTTATG
  ATGCTCTTAA AAGCACCTTT TGAGTGCTGG AATCCCAGGC ACGTGTATAC CACCCTATCA
  GGTTTGTGTG GCGCTGCCAA TTGAACCAAG AGACTTGTGC ATTCAAGCCA AGCGCTCTAC
  CCATTGAACT ACATCCCCAG ACCAATAAAA CTCTGCAAAC CAAAAACACA CTTATTATGT
  M
  CAGAAACCAA AGAAAGCAGG GTAAAAAAAT AAAAATTTCA GCCACCTACT TTTTTCTCCT
  CTTTATCTCC CACATTCAAT CTGTAGCCAT TCCCTCAATT TCATATTAGA GATGAATATC
  CAAGTCAGTA TTAATTTTTC TGACTTCCAA AATGTATGCC TTTGTCCTCT CTACTCAAGT
  CCTCATATCT AGACCCTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381314814	MGP_WTSI_10_93497029	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223924854					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381314814	MGP_WTSI_10_93497029	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93870146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	1022 bp proximal
Fgd6	FYVE, RhoGEF and PH domain containing 6	1717 bp upstream
Gm49628	predicted gene, 49628	within coordinates
Rr402165	regulatory region 402165	1431 bp upstream
Rr437370	regulatory region 437370	454 bp proximal
Rr437371	regulatory region 437371	1411 bp proximal
Rr437372	regulatory region 437372	1677 bp proximal
Rr437373	regulatory region 437373	1728 bp proximal
Tssr95293	transcription start site region 95293	1165 bp upstream
Tssr95294	transcription start site region 95294	1760 bp upstream
Tssr95295	transcription start site region 95295	1773 bp upstream
Tssr98985	transcription start site region 98985	1444 bp downstream
Tssr98986	transcription start site region 98986	1487 bp downstream
Tssr98987	transcription start site region 98987	1505 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	within coordinates