rs223928924 SNP Detail

Summary

• ID
  rs223928924
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69574952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCTCCC TTGTCCTTCC
  CGAGATACCA CCTGACCCAT TGTGAAAGTC ACATCATGAA ACAGGACCTG TCAGAGAAGG
  GAGACGCTGA AGAAAACCGG GATGGCACCA TTCAGTCCCT GGAGGCCTCA GGAGCACTGG
  CAGTGGAGCC AGGCAATAAG GAGGGGGTTT TCTAAGTTTA GTATGAGCAG AGGGATCAGG
  R
  AAACCCTCCT TACAGACAGG GTACATAGAA AGAAGAGTGA CAAGCCAGTC TCCATGTCCA
  CACGGCAGGC TCAGGGCTTA TCTGGGATTA CCTGACTATA GAGCAGATAA ATTCCAGTGT
  CCCAGACTCG TACAATGTCT CCCTGGGCCT CCAGGCCTCT CCCACGCCTA AGTACTGGTT
  GCCACATCAC CTCTGTCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383788723	MGP_WTSI_11_69497628	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223928924					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383788723	MGP_WTSI_11_69497628	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69574952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	1833 bp distal
Rr450069	regulatory region 450069	1552 bp distal
Rr450070	regulatory region 450070	1163 bp distal
Rr450071	regulatory region 450071	within coordinates
Rr450072	regulatory region 450072	1123 bp proximal
Rr450073	regulatory region 450073	1418 bp proximal
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	197 bp upstream
Tssr102520	transcription start site region 102520	229 bp upstream
Tssr102521	transcription start site region 102521	270 bp upstream
Tssr102522	transcription start site region 102522	363 bp upstream
Tssr102523	transcription start site region 102523	425 bp upstream
Tssr102524	transcription start site region 102524	1811 bp upstream
Tssr108781	transcription start site region 108781	1149 bp downstream
Tssr108782	transcription start site region 108782	1211 bp downstream
Tssr108783	transcription start site region 108783	1394 bp downstream
Tssr108784	transcription start site region 108784	1411 bp downstream