rs223929736 SNP Detail

Summary

• ID
  rs223929736
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78713424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGAGAAT CTGTGACCAT
  CTTAAGATTC TGCATATGGG CTGGAGAGAT GGCTCAGTGG GTAAGAGCAC CTGACTGCTC
  TTCCAAAGGT CCTGAGTTCA AATCCCAGCA ACCACATGGT GGCTCACAAC CATCTGTAAT
  AAGATCTGAC TCCCTCTTCT GGTGTGTCTG AAGACAGCTA CAGTGTACTT ACATATAATA
  M
  ATAAACAAAT AAATAAAAAA ATAAATAAAG ATTCTGCATA TGCCACCAGT AGAAACAGAC
  AGTTTGAACC TGGTAAAGTA GAGCTTGCAT TAAACAGGAT CAAAAGACAA AAAAAAATTA
  AAAAGAAAGA AAGAAAAGAA ACACATTCAT AGGCGCACCA ACTCCTTTGT AAGATGGGTC
  CGAATGTGCC TGCGGCAAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323757654	CHEV_11_78636100	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223929736					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78713424 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm78	DNA segment, Chr 11, Boehm 78	746 bp proximal
D11Bhm79	DNA segment, Chr 11, Boehm 79	1890 bp proximal
Gm23219	predicted gene, 23219	1789 bp upstream
Rr452070	regulatory region 452070	1897 bp distal
Rr452071	regulatory region 452071	34 bp distal
Rr452072	regulatory region 452072	288 bp proximal
Rr452073	regulatory region 452073	381 bp proximal