rs223931990 SNP Detail

Summary

• ID
  rs223931990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52467705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGACATGTT GCCTATACCC CAGCTCTGCA
  TGGAGACTGA GAAGAGGGAC AAGTCAGGGC GAGAGAGAGG AGAAGGAGAG GGAGAGAGGG
  GCTTTTCTTA CGTTCCTGAT AGAATGTGGC CTCTCTGGCC ATTACTATCC AGTTGTTGTG
  Y
  CTTCTCTGTG GCAGATATGC AAACCCTGGC ATCCTCACTT ATACCTATGT GAATTTTCCT
  AAAGTCCCAT TGGGGACTTG ATATTTCATA GCTGTCCCCA TCTGCTTCAA ATCTTGCCTA
  TTAGTTGGGT TTTGCTAAGA GGGTCCATTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319720177	CHEV_1_52485390	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223931990					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52467705 () rs orientation: forward

Symbol	Name	Function Class
Gm69377	predicted gene, 69377	within coordinates
Rr410861	regulatory region 410861	158 bp distal
Rr410862	regulatory region 410862	487 bp proximal
Rr410863	regulatory region 410863	1776 bp proximal