rs223943315 SNP Detail

Summary

• ID
  rs223943315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87844404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTACTGTT TACAAGAAAA
  GTGAGTGCAG TCCAGAGAGA AAAAGAAATT AGTGAGCAGA GTATACAAAG AGACATCTAA
  ACAATGCTAA TTCTTTCTCT GTCTACAGGT GAACTTTAAA TTCCATTCTT AAATCAAAAC
  ACACAAACAT AATGGAAAAT ACAGACTAAT GGCAATATAT TACAGTAGTC ACTATGAGTT
  Y
  GCTTGCTACT ATGCTAGGCT TCAAATAAGC CATGAGAAAT GAATACTTCC TCTGAGGTAT
  TTGCAGCATT GTGACGAGAA AATAATAGAC ACATGATAAG TATTTCATGG TAAAGAGATG
  GTAAGTATTT CATGTGATAC TCTCAGGTAA ATTTAAGATT TCATTGTATC CTGTTGATTC
  TTATTTATGT AAATGACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777323	MGP_WTSI_5_88125570	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223943315					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777323	MGP_WTSI_5_88125570	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87844404 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
Tssr1529	transcription start site region 1529	1984 bp downstream
Tssr46885	transcription start site region 46885	1998 bp downstream
Tssr46886	transcription start site region 46886	1968 bp downstream
Tssr46887	transcription start site region 46887	1951 bp downstream
Tssr46888	transcription start site region 46888	1845 bp downstream
Tssr46889	transcription start site region 46889	1826 bp downstream
Tssr46890	transcription start site region 46890	1793 bp downstream
Tssr46891	transcription start site region 46891	1780 bp downstream
Tssr46892	transcription start site region 46892	1751 bp downstream
Tssr46893	transcription start site region 46893	1725 bp downstream
Tssr46894	transcription start site region 46894	1680 bp downstream
Tssr46895	transcription start site region 46895	1660 bp downstream
Tssr46896	transcription start site region 46896	1581 bp downstream
Tssr51619	transcription start site region 51619	1971 bp upstream
Tssr51620	transcription start site region 51620	1961 bp upstream
Tssr51621	transcription start site region 51621	1942 bp upstream
Tssr51622	transcription start site region 51622	1906 bp upstream
Tssr51623	transcription start site region 51623	1890 bp upstream
Tssr51624	transcription start site region 51624	1873 bp upstream
Tssr51625	transcription start site region 51625	1863 bp upstream
Tssr51626	transcription start site region 51626	1851 bp upstream
Tssr51627	transcription start site region 51627	1825 bp upstream
Tssr51628	transcription start site region 51628	1715 bp upstream
Tssr51629	transcription start site region 51629	1621 bp upstream
Tssr51630	transcription start site region 51630	1573 bp upstream
Tssr51631	transcription start site region 51631	1534 bp upstream
Tssr51632	transcription start site region 51632	1275 bp upstream
Tssr51633	transcription start site region 51633	471 bp upstream
Tssr51634	transcription start site region 51634	366 bp upstream
Tssr51635	transcription start site region 51635	594 bp downstream
Tssr51636	transcription start site region 51636	620 bp downstream
Tssr51637	transcription start site region 51637	733 bp downstream
Tssr51638	transcription start site region 51638	1509 bp downstream
Tssr51639	transcription start site region 51639	1516 bp downstream