rs223943706 SNP Detail

Summary

• ID
  rs223943706
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95727783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACGTAG GAGCACTGAC
  TGCTCTTCCA AAGGTCCTGA GTTAAAATCC CAGCAACCAC ATGGTGGCTC ACAATCATCC
  TTAATAAGAT CTGACGCCCT CTCTGGTGTG TCTGAAGACA GCTACAGTGT ACTTAGATAT
  AATAATAAAG AAAATCTTTT TAAAAAATTA ACCATTACAT TCTCATCTGC CTGTGTGAAT
  Y
  TTTTGAGAAG ATTGGACGTT CATGTATTCC TATTGAACAC AGGAACTTCA TTTTAATTAT
  GCCAACTCAA CGGAAAGGTT TTTGAGGCAA GGAGCCTGTT TCATCATTTA AAATTAATAT
  CTCTGTGCCA AGAACTGTTT TAGGATTAGG GAAATGATGG CAAAGCAGAC AAAAATTACT
  CCGCCTTGAT TTGGTATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358908359	MGP_WTSI_3_95624394	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223943706					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358908359	MGP_WTSI_3_95624394	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95727783 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13521	CpG island 13521	440 bp distal
Gm29948	predicted gene, 29948	within coordinates
Rprd2	regulation of nuclear pre-mRNA domain containing 2	1608 bp upstream
Rr375410	regulatory region 375410	within coordinates
Rr581038	regulatory region 581038	1641 bp distal
Rr581039	regulatory region 581039	923 bp distal
Rr581040	regulatory region 581040	37 bp distal
Tssr30646	transcription start site region 30646	1149 bp downstream
Tssr34543	transcription start site region 34543	1670 bp upstream
Tssr34544	transcription start site region 34544	1594 bp upstream
Tssr34545	transcription start site region 34545	1564 bp upstream
Tssr34546	transcription start site region 34546	1481 bp upstream
Tssr34547	transcription start site region 34547	1396 bp upstream
Tssr34548	transcription start site region 34548	1224 bp upstream
Tssr34549	transcription start site region 34549	1091 bp upstream