rs223946050 SNP Detail

Summary

• ID
  rs223946050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64086099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCATCAG AATTATAGAA
  CAAAATTTTT TAAATAAAAT TTCATTCTCT AGGCTGCTTT GTTCCACATG GTAGTCTACT
  TTATAAACTG AACTTGGGAT AAATAGCTAG GGGCCAAGTC CTATGAATAG TGTGTAGTTA
  TGGTAGCCAC TAGAGGGCCT ATGATGGTAA AAGGGAATGG CGGGACCACC ACAGCTATGG
  Y
  CACTGTGTCT GTAGAGGTGC AGTGTTCTTT GTATGAATCA GTCTGATCAT CCTAGAATTA
  TCATCGTTTC CTCTTGCCTT GATGTTAAAA CTGCTAGCAG ATAATGATGA GCGTGGGTAA
  AAACACTCCC TGAGACAAGG CAGTTCCTAA AGGTTAGTAG CATTCCTGTC CTTACTAGGC
  TTAGGTATTT TGGGTATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377838389	MGP_WTSI_9_64026624	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223946050					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377838389	MGP_WTSI_9_64026624	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64086099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21924	CpG island 21924	359 bp proximal
Gm22455	predicted gene, 22455	1624 bp downstream
Rpl4	ribosomal protein L4	151 bp downstream
Rr368801	regulatory region 368801	436 bp upstream
Rr681196	regulatory region 681196	within coordinates
Rr681197	regulatory region 681197	533 bp proximal
Rr681198	regulatory region 681198	667 bp proximal
Snapc5	small nuclear RNA activating complex, polypeptide 5	457 bp upstream
Tssr85600	transcription start site region 85600	1799 bp downstream
Tssr85601	transcription start site region 85601	1419 bp downstream
Tssr85602	transcription start site region 85602	1365 bp downstream
Tssr85603	transcription start site region 85603	1079 bp downstream
Tssr85604	transcription start site region 85604	1037 bp downstream
Tssr85605	transcription start site region 85605	461 bp downstream
Tssr85606	transcription start site region 85606	401 bp downstream
Tssr85607	transcription start site region 85607	454 bp upstream
Tssr85608	transcription start site region 85608	472 bp upstream
Tssr90132	transcription start site region 90132	1006 bp upstream
Tssr90133	transcription start site region 90133	438 bp upstream
Tssr90134	transcription start site region 90134	368 bp upstream