rs223946409 SNP Detail

Summary

• ID
  rs223946409
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22036357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCACCCC CGGCGGAGGG
  CAGCATGCCT CCCGGCGAAC AGGCCGAGGC GCTGGAGCTG GGACTGCCTG TCCTGGGCGT
  AAATGGCTGG CAGGTGGCGC TCGGTACCCG GAATCCTGAC TTCTCTGCAG CAACACCCCC
  GCCGCCGCCC CCGCCGCCGC CGCCTCCGCC GCCGCCTCCC GGCTCCTTCT TATCTGAACC
  S
  GGTTTGGAGT AAGGCTTGAA ACTCGACTTG TCCTCCACGC CGATGTCGCT CAGCTTCAAG
  GGGCCCGACT TGGCGTCCTT GTCGCCCCCA GCTCCGTTGC CTGCACCACC CGCGCCGCCG
  CCGTTGGAGG CGACCGAGGA GAGTTTGGAA GAAGGCGAAG GGTCCGGCTT CCCTATCTGC
  GAACATGTTT GAGCCAGCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390501686	MGP_WTSI_14_22805511	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223946409					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390501686	MGP_WTSI_14_22805511	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22036357 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6225	CpG island 6225	within coordinates
Cpgi6226	CpG island 6226	795 bp proximal
Rr488632	regulatory region 488632	97 bp distal
Rr488633	regulatory region 488633	14 bp distal
Tssr127698	transcription start site region 127698	632 bp upstream
Tssr127699	transcription start site region 127699	1204 bp downstream
Tssr127700	transcription start site region 127700	1267 bp downstream
Tssr127701	transcription start site region 127701	1572 bp downstream
Tssr127702	transcription start site region 127702	1596 bp downstream
Tssr127703	transcription start site region 127703	1705 bp downstream
Zfp503	zinc finger protein 503	within coordinates