rs223946997 SNP Detail

Summary

• ID
  rs223946997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:93870642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATTGTCA CCCCACCCCG
  ATCTTTGGCA TACATAAAAC CCTTTTCCTG GAGTACATTT TCTCCCATCA ATCTTCCTAA
  TTTCATTCAG AGCTGAAGAT TTACCTAGGG TATCACTTGC TGTGTGTAGC TTTTTAAAGT
  GCTATGAGTG GACAATGGGT TCCAAATTAT GCTTCCACGG GCAGTTTTTA GATATCTCAA
  Y
  ACTTCACATT CTGTACCGTA CCTCACCCTC CCATTATACA CCACGGGGGA TTTCTTCTCT
  TTCTCTTGTA TGAATTCCCT GAAATCTAGT TGGCTGAGGG AAAGTATGGC ATACATATTC
  AATACATACA CATACACGTT CCAGGGTGTG GGTATTGACC TGTCTGATGG GGTAAAAATG
  GCACTAAAGC CATTAACTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381314831	MGP_WTSI_10_93497525	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223946997					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381314831	MGP_WTSI_10_93497525	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93870642 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2121	CpG island 2121			526 bp proximal
Fgd6	FYVE, RhoGEF and PH domain containing 6			1221 bp upstream
Gm49628	predicted gene, 49628			within coordinates
Rr402165	regulatory region 402165			935 bp upstream
Rr437370	regulatory region 437370			within coordinates
Rr437371	regulatory region 437371			915 bp proximal
Rr437372	regulatory region 437372			1181 bp proximal
Rr437373	regulatory region 437373			1232 bp proximal
Tssr3327	transcription start site region 3327			1584 bp upstream
Tssr95293	transcription start site region 95293			669 bp upstream
Tssr95294	transcription start site region 95294			1264 bp upstream
Tssr95295	transcription start site region 95295			1277 bp upstream
Tssr98985	transcription start site region 98985			948 bp downstream
Tssr98986	transcription start site region 98986			991 bp downstream
Tssr98987	transcription start site region 98987			1009 bp downstream
Tssr98988	transcription start site region 98988			1943 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein			Intron
				Noncoding-Transcript-Variant