rs223948008 SNP Detail

Summary

• ID
  rs223948008
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62722763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGCGCTG TAAGGTCCCC
  CGCGAGCATT GTTAGTCACC CGCCACGAAA GACCCGGAGC GGCCCGGGAT AGGGGGTCGT
  GGCGCGGAGT TGACTCGCAC GAGTCATCAC CAAGCATCGC GGCGTGCAAA GTCCTAGCCC
  GATCGAGATC CGCCCCCCAG CTCCGTCCCG CCACGGAGTA GTACCCTCTC CCAACTCCCC
  K
  GCTCTTTGCT GCCGCCCCAG CTCACCCTAA ACTGCCTCTG GATCCCAGGG CAGCGCGGGT
  CACCCCTGCT AGAAGCCTGC ACCAATCCTT GGACAAACTT TCCAGCGGGT CTTGGTCCGT
  GCAACTTTGG AGCCTGAGGC TCCGGCACGC GCCAAGGAGT TCAGGCGGGC CTAGGATGGA
  CACTTACCAT CCGGCACGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323332082	CHEV_10_62349732	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223948008					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62722763 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1638	CpG island 1638	within coordinates
Gm51805	predicted gene, 51805	within coordinates
Rr384811	regulatory region 384811	within coordinates
Tet1	tet methylcytosine dioxygenase 1	within coordinates
Tssr93732	transcription start site region 93732	1312 bp downstream
Tssr97890	transcription start site region 97890	428 bp downstream
Tssr97891	transcription start site region 97891	477 bp downstream