rs223948338 SNP Detail

Summary

• ID
  rs223948338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184583871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    caattcaaa acAACCTCAG AGAATTGGAA
  AACAACACAG GGTCCTGTCT GCCTGTTCTG TCTCATTGAT AAAAGAATTT TAAACTGGAG
  TTTGGCAGAA AGAAAAACAA ACAGAGTGAG AGATGTCAGC AGTGACCAGG AGATGGGGAT
  R
  TTAGAAAGTC ATGCTGTGTG AGTTAGAGGA CAGGAACACA AAGCAGGTGT GTGAGGGAAG
  GGCGGCTTCA GAGAGAAGGG GAGCTACCTC CGGTGCCGGA GCTTAGGATT TCCGTTGAAG
  TTGGAAAAGG GGAGATAGAA AGGCTCCACT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169911	CHEV_1_186675553	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223948338					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184583871 () rs orientation: forward

Symbol	Name	Function Class
Gm34451	predicted gene, 34451	within coordinates
Rr372580	regulatory region 372580	1644 bp downstream
Rr396695	regulatory region 396695	679 bp upstream
Rr425307	regulatory region 425307	within coordinates
Rr425308	regulatory region 425308	1570 bp proximal