rs223951214 SNP Detail

Summary

• ID
  rs223951214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128203692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATAATCTC AGCTCTAGGG
  AGGTAGGTGG AGGCAAGATA TAAGTTCAAA GTCTTCTTGA CTGTATATCA AGTTCAAGGC
  CAACCCTAGG CTATGTGAGA GCCTGTCTCA AAATGTGTGT GTGTGAGATA CCTATGATGC
  AGCTCTGGCT ATGTAGTCCG TGGAAGCTTC AAGCTTAGAT TACAGGCTGT ACTACCTAGT
  Y
  GGTTACCTTT CTATGATGTA ACACAATTCT AGACTAATAC ACGTGCAGAA CAACTAAGGT
  GGGAAATTTA GGTTGAAAGG CTGGCAGCGA AAACGTTGCT GGGGAGACAA GTGGCCCAAT
  ATGAATCTTA CCCACTACTG GTACATGGTT ATTTATTTGA AGGGGAAAAA AAGGAATGCT
  CACCCCATGA TCCTACGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323533358	CHEV_10_127804879	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223951214					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128203692 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq10a	coenzyme Q10A			Intron
				Noncoding-Transcript-Variant
Rr369103	regulatory region 369103			1138 bp upstream
Rr441196	regulatory region 441196			827 bp proximal
Rr441197	regulatory region 441197			858 bp proximal
Tssr99854	transcription start site region 99854			853 bp downstream
Tssr99855	transcription start site region 99855			1067 bp downstream
Tssr99856	transcription start site region 99856			1120 bp downstream
Tssr99857	transcription start site region 99857			1259 bp downstream
Tssr99858	transcription start site region 99858			1299 bp downstream