rs223958256 SNP Detail

Summary

• ID
  rs223958256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATT GCAGGTGTGA GCTAACACAC
  Y
  TGGCTCATAC TTTTCATTTA TGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss639705892	FVB_NJ_2_113874464	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	T	T	C	C	C	T	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223958256					SNP	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	T	T	C	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639705892	FVB_NJ_2_113874464	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879209 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	1159 bp upstream
Tssr601	transcription start site region 601	1148 bp upstream
Tssr602	transcription start site region 602	1749 bp downstream
Tssr19429	transcription start site region 19429	1431 bp downstream
Tssr19430	transcription start site region 19430	1321 bp downstream
Tssr19431	transcription start site region 19431	1237 bp downstream
Tssr19432	transcription start site region 19432	1154 bp downstream
Tssr19433	transcription start site region 19433	564 bp downstream
Tssr19434	transcription start site region 19434	520 bp downstream
Tssr19435	transcription start site region 19435	441 bp upstream
Tssr19436	transcription start site region 19436	822 bp upstream
Tssr19437	transcription start site region 19437	1557 bp upstream
Tssr19438	transcription start site region 19438	1640 bp upstream
Tssr19439	transcription start site region 19439	1705 bp upstream
Tssr25660	transcription start site region 25660	1410 bp upstream
Tssr25661	transcription start site region 25661	1389 bp upstream
Tssr25662	transcription start site region 25662	1286 bp upstream
Tssr25663	transcription start site region 25663	1260 bp upstream
Tssr25664	transcription start site region 25664	1219 bp upstream
Tssr25665	transcription start site region 25665	1111 bp upstream
Tssr25666	transcription start site region 25666	557 bp upstream
Tssr25667	transcription start site region 25667	514 bp upstream
Tssr25668	transcription start site region 25668	487 bp upstream
Tssr25669	transcription start site region 25669	424 bp upstream
Tssr25670	transcription start site region 25670	473 bp downstream
Tssr25671	transcription start site region 25671	516 bp downstream
Tssr25672	transcription start site region 25672	585 bp downstream
Tssr25673	transcription start site region 25673	620 bp downstream
Tssr25674	transcription start site region 25674	824 bp downstream
Tssr25675	transcription start site region 25675	872 bp downstream
Tssr25676	transcription start site region 25676	909 bp downstream
Tssr25677	transcription start site region 25677	936 bp downstream
Tssr25678	transcription start site region 25678	1608 bp downstream
Tssr25679	transcription start site region 25679	1617 bp downstream
Tssr25680	transcription start site region 25680	1630 bp downstream
Tssr25681	transcription start site region 25681	1677 bp downstream
Tssr25682	transcription start site region 25682	1759 bp downstream
Tssr25683	transcription start site region 25683	1766 bp downstream
Tssr25684	transcription start site region 25684	1857 bp downstream