rs223958629 SNP Detail

Summary

• ID
  rs223958629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:56982133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGTAAGAC TAATCCCACC
  TAACCTCTCA TGGCACAGCG AAAGCCTCCC CAAAGCAAGG TCGGCATCGG GCCCACGCCT
  TACTAGTGAA TAAATAAAAG AACTAGGTCT TTATTATTAT TATTATTATT AATTAATTAA
  TGTATTATAT GTAAGTACAC TGTAGTTGTC TTCAGACACT CCAGAAGAGA GCATCAGATT
  Y
  CATTACGGAT GGTTGTGAGC CACCATGTGG TTGCTGGGAT TTGAACTCAG GACCTTTGGA
  AGAGCAGACG GCGTTCTTAG CCGCTGAGCC ATCTCACCAG CCCAAGAACT AGGTATTTCA
  AAGCACTTTT TGTGTTCAGG CATTGTTACT TACCCAGAAG GCTTAGAGAC CGCCATTAAC
  TCACTCTGCT AAGGAGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377681870	MGP_WTSI_9_56922656	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223958629					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377681870	MGP_WTSI_9_56922656	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56982133 () rs orientation: forward

Symbol	Name	Function Class
2700012I20Rik	RIKEN cDNA 2700012I20 gene	354 bp downstream
Cpgi21807	CpG island 21807	647 bp distal
Cpgi21808	CpG island 21808	242 bp distal
Cpgi21809	CpG island 21809	826 bp proximal
Gm57026	predicted gene, 57026	84 bp downstream
Rr368762	regulatory region 368762	462 bp downstream
Rr401392	regulatory region 401392	325 bp upstream
Rr401393	regulatory region 401393	1087 bp upstream
Rr679582	regulatory region 679582	1774 bp distal
Rr679583	regulatory region 679583	1097 bp distal
Rr679584	regulatory region 679584	1353 bp distal
Rr679585	regulatory region 679585	1273 bp distal
Rr679586	regulatory region 679586	within coordinates
Rr679587	regulatory region 679587	500 bp proximal
Rr679588	regulatory region 679588	985 bp proximal
Rr679589	regulatory region 679589	1177 bp proximal
Rr679590	regulatory region 679590	1561 bp proximal
Rr679591	regulatory region 679591	1973 bp proximal
Sin3a	transcriptional regulator, SIN3A (yeast)	Intron
Tssr2884	transcription start site region 2884	586 bp upstream
Tssr85284	transcription start site region 85284	1095 bp downstream
Tssr85285	transcription start site region 85285	977 bp downstream
Tssr85286	transcription start site region 85286	1494 bp upstream
Tssr85287	transcription start site region 85287	1546 bp upstream