rs223959919 SNP Detail

Summary

• ID
  rs223959919
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25946370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTCCAT GCTGCAGCAG
  GATGCAGCCA CGACCCAGGA CCCGCGCCCA CCTTCCAGCT CAGCCAGCAC TTCGAGCTCA
  GCTGCGAACT GGTTTTGGAA ATCATCCTCC ACACCATACA GATCTTCCTC GTAGTCTTCC
  ATGGAGCCAG ACCACAACTC CCACAGCTCA GAGTCCCTCA GAACTTCCCG CGCCGCCGCC
  W
  CCGCGCGCTA CCCCGCCCCG AGAGCCTCCA ATACCGCCAA TCAACAGCCG ACGTTCCCAG
  AGGCGCCCGC CATTGGCCAG CGGGGAAGGG CGGGTCTTAC TCCCAGAGGG CGGGAGGAGA
  GGAATAATAG TTCAATGGTT GGAGTGGAGG ATCAAGAACG CTTTCTATTG GCCTGTACAG
  TAAGTAATCC GTGGGGGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397883744	MGP_WTSI_17_25864341	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223959919					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397883744	MGP_WTSI_17_25864341	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25946370 () rs orientation: forward

Symbol	Name	Function Class
Chtf18	CTF18, chromosome transmission fidelity factor 18	within coordinates
Cpgi8774	CpG island 8774	within coordinates
Rpusd1	RNA pseudouridylate synthase domain containing 1	274 bp upstream
Rr339369	regulatory region 339369	within coordinates
Rr405102	regulatory region 405102	106 bp upstream
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates
Tssr143173	transcription start site region 143173	330 bp upstream
Tssr146846	transcription start site region 146846	33 bp upstream
Tssr146847	transcription start site region 146847	within coordinates