rs223965999 SNP Detail

Summary

• ID
  rs223965999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:40058696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAATGAA TTTATGTTAA
  ATGAATTAGT GAATGAATGG ATGGACAGAC CCCTATTTCA ATCTCTATTT GTATTTGAGG
  AAAATATCTT ACATTTCAAG AACTAATACT TAATCAATAT CAATTAAGTT TTTCTTAGAA
  TTTAATAGGA TTCTGCACAG TTAGGTGAGG GGAACAGCAG AAGGTCTGAA GAAGGCAGGA
  R
  CATCCCTCTA CTCAACAGGT AGAGCATCTA GGTAAAAGGT GCCAGGGGAT GGGAGTCATT
  GTAGCAGAGC ATATGCCATA AGGTACTTAT GTCAATGGAG GCCCCAACAG CACCCAGGGT
  TAGAAGAAGT TACAAGAAGC CAGGCATGGC ATGACACAGG AACCAATGTC ATTTGAAGGA
  GTTGCAAAAG GATCCCAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374370433	MGP_WTSI_8_40691009	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223965999					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374370433	MGP_WTSI_8_40691009	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40058696 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Msr1	macrophage scavenger receptor 1			Intron
				mRNA-UTR
Tssr2550	transcription start site region 2550			181 bp upstream
Tssr80996	transcription start site region 80996			1073 bp upstream
Tssr80997	transcription start site region 80997			1050 bp upstream
Tssr80998	transcription start site region 80998			637 bp upstream
Tssr80999	transcription start site region 80999			575 bp upstream
Tssr81000	transcription start site region 81000			391 bp upstream
Tssr81001	transcription start site region 81001			375 bp upstream
Tssr81002	transcription start site region 81002			349 bp upstream
Tssr81003	transcription start site region 81003			323 bp upstream
Tssr81004	transcription start site region 81004			271 bp upstream
Tssr81005	transcription start site region 81005			246 bp upstream
Tssr81006	transcription start site region 81006			209 bp upstream
Tssr81007	transcription start site region 81007			144 bp upstream
Tssr81008	transcription start site region 81008			43 bp upstream
Tssr81009	transcription start site region 81009			12 bp upstream
Tssr81010	transcription start site region 81010			within coordinates
Tssr81011	transcription start site region 81011			70 bp downstream
Tssr81012	transcription start site region 81012			95 bp downstream
Tssr81013	transcription start site region 81013			263 bp downstream
Tssr81014	transcription start site region 81014			290 bp downstream
Tssr81015	transcription start site region 81015			1892 bp downstream