rs223969224 SNP Detail

Summary

• ID
  rs223969224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28044893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGTAGT CTGATGATAA
  TGCCCGCCCA CTTTCAGGGA TCTCTCTCCT TTCCCCTCTC TCCTTTCTTC TCTCTTATCT
  AGTGTTTGGG GTTTGAAATG GTGGATGAAA GAAGAACCCA CAAAGTAGCA AAGACACCTA
  TAACCCTGTC TTTTTTGGTT TTTGGTTTTT GACACAGGGT TTCTCTGTGT AGCCCTGGCT
  R
  TCCTGGAACT CACTCTGTAG ACCAGGCTGG CCTGGAACTC AGAATTCCGC CTGCCTCTGC
  CCCTCAAGTG CTGGGATTAA AGGCATGCAT CACCATTGCC TGGCACTACA ACCTTGCCTT
  AGTAACCTTC TGCTAGGAGA CTCTTCTTGT ACAAATTGTA GAGAGTCATC ATTTCCGAGA
  ATAAGAGGTG GAAGTGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349853	CHEV_17_27962864	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223969224					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28044893 () rs orientation: forward

Symbol	Name	Function Class
Gm65125	predicted gene, 65125	302 bp downstream
Rr405125	regulatory region 405125	283 bp upstream
Rr405126	regulatory region 405126	1338 bp upstream
Rr524320	regulatory region 524320	642 bp distal
Rr524321	regulatory region 524321	within coordinates
Rr524322	regulatory region 524322	490 bp proximal
Rr524323	regulatory region 524323	1317 bp proximal
Tssr143360	transcription start site region 143360	670 bp downstream
Tssr143361	transcription start site region 143361	619 bp downstream
Tssr147072	transcription start site region 147072	118 bp downstream
Tssr147073	transcription start site region 147073	1005 bp downstream