rs223972780 SNP Detail

Summary

• ID
  rs223972780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23863756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCTCACC ACGCCCATGC
  TCACGACCTT CGCATCGGGA TTCTGAGCGC GCACCGGCAG CAGCGGAACC AACAGAAGCG
  CCAGCAACGG GAGACCGAAA GCCGGCAGCC TCAAGATGCG TTCAGCTTGG ACGGACCGCG
  GAGGCACGCG AAGAGGCCCT GACTCCCGCC GCCGTGGAAG TCTGGAGGAG GTCAGGGACC
  Y
  GGTGCAGATC CAGGGAGCCG ACACAAGGTA GTAGAGACGG GCAGGAGAGA TCTGGGATCC
  TGGGAAGCAC ATCACGGGCT GAACGGCGAT AATCGAGGGT CCAGGTGGCG CTGGGGAGTG
  GGGGTCCTGA GAGCGTGGAG AAGGCTCAGG AGGGGACAGA GGTCCGGCAA AGAGGTCCCC
  TACTCCTGTC TCCTCCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397839671	MGP_WTSI_17_23781749	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223972780					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397839671	MGP_WTSI_17_23781749	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23863756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8679	CpG island 8679	within coordinates
Gm7773	predicted gene 7773	1638 bp downstream
Mmp25	matrix metallopeptidase 25	within coordinates
Rr339268	regulatory region 339268	within coordinates
Tssr146620	transcription start site region 146620	171 bp downstream
Tssr146621	transcription start site region 146621	197 bp downstream
Tssr146622	transcription start site region 146622	217 bp downstream
Tssr146623	transcription start site region 146623	265 bp downstream
Tssr146624	transcription start site region 146624	284 bp downstream
Tssr146625	transcription start site region 146625	450 bp downstream
Tssr146626	transcription start site region 146626	482 bp downstream