rs223974152 SNP Detail

Summary

• ID
  rs223974152
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25234459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCCGGTC GTTCCCCAGA
  GGCGGTGGAC TCCATAGGAG TCCGTCACCG AAACCCGTCA CTTCCTGACC GTGGGAGGCG
  CGGGCACTGT GGGCCTCGTC CCGGCTCCAC ACCCTTTGTC CCATTTCGGG TGGGAGAAGC
  TCGCACCTTC CTGAGGAGCT GACCGCTGGC TGCACGCGGC GCAGCCCACG AATACCGCGG
  S
  CCCTCCGCGG ATCCCGAAGG CTCCCAAGTG CAGCCTACGG TCACCTTTTT CATCCACGCT
  TCCCGGCAGC CTGGCTCCCG GATCCCGGGC CTCCGCAGAA CCGACCGGGC CCGGCAGCTC
  CGGCTGCGGC GAAGCCGCGA CGCCGGGCTG GTGGTCAGGT GTCAGGCGCG GTCACCAAGC
  ACTGTTCCCC TTCGCAAGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397867889	MGP_WTSI_17_25152430	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223974152					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397867889	MGP_WTSI_17_25152430	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25234459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8751	CpG island 8751	864 bp distal
Cpgi8752	CpG island 8752	within coordinates
Cramp1	cramped chromatin regulator 1	within coordinates
Ift140	intraflagellar transport 140	597 bp upstream
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	275 bp upstream
Tssr143119	transcription start site region 143119	583 bp upstream
Tssr143120	transcription start site region 143120	858 bp upstream
Tssr143121	transcription start site region 143121	1021 bp upstream
Tssr143122	transcription start site region 143122	1096 bp upstream
Tssr146804	transcription start site region 146804	1151 bp upstream
Tssr146805	transcription start site region 146805	204 bp downstream
Tssr146806	transcription start site region 146806	223 bp downstream
Tssr146807	transcription start site region 146807	256 bp downstream
Tssr146808	transcription start site region 146808	281 bp downstream
Tssr146809	transcription start site region 146809	313 bp downstream