rs223974716 SNP Detail

Summary

• ID
  rs223974716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86285658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGCACCT GAGCTTTTCT AAGAAATCTG
  ATTGAGCATG ACCATAACAA CGGtcttgag acaaggtttc actatgtact actccctgct
  tgcctggaac tcaaaattct gcctgtttct gtcccctgTT TTGCCGACTG TCTTGCAgaa
  R
  gaaggaagga aggaaggaag gaaggaagga agggagggag ggagggaggg agggagggag
  ggagggaggg aggaagggGC TTGCCATTCA ACCATTTACT ACATATCCTG TATTTCTAAG
  ACTTCCAGAC ATTCAATTCC ACCGGTTTAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319828134	CHEV_1_88254511	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223974716					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86285658 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	1648 bp upstream
Cpgi503	CpG island 503	616 bp proximal
D1Mit516	DNA Segment, Chr 1, Massachusetts Institute of Technology-516	within coordinates
Gm71192	predicted gene, 71192	1716 bp downstream
Ncl	nucleolin	within coordinates
Rr396146	regulatory region 396146	1379 bp upstream
Snord82	small nucleolar RNA, C/D box 82	1609 bp upstream
Tssr142	transcription start site region 142	905 bp downstream
Tssr7744	transcription start site region 7744	1509 bp downstream
Tssr7745	transcription start site region 7745	1303 bp downstream
Tssr7746	transcription start site region 7746	875 bp downstream
Tssr7747	transcription start site region 7747	823 bp downstream
Tssr7748	transcription start site region 7748	642 bp downstream
Tssr7749	transcription start site region 7749	1617 bp upstream
Tssr7750	transcription start site region 7750	1702 bp upstream
Tssr12773	transcription start site region 12773	1738 bp upstream
Tssr12774	transcription start site region 12774	1608 bp upstream
Tssr12775	transcription start site region 12775	1472 bp upstream
Tssr12776	transcription start site region 12776	1285 bp upstream
Tssr12777	transcription start site region 12777	864 bp upstream
Tssr12778	transcription start site region 12778	787 bp upstream
Tssr12779	transcription start site region 12779	768 bp upstream
Tssr12780	transcription start site region 12780	715 bp upstream
Tssr12781	transcription start site region 12781	667 bp upstream
Tssr12782	transcription start site region 12782	592 bp upstream
Tssr12783	transcription start site region 12783	558 bp upstream
Tssr12784	transcription start site region 12784	531 bp upstream
Tssr12785	transcription start site region 12785	502 bp upstream
Tssr12786	transcription start site region 12786	275 bp downstream
Tssr12787	transcription start site region 12787	540 bp downstream
Tssr12788	transcription start site region 12788	1034 bp downstream
Tssr12789	transcription start site region 12789	1082 bp downstream
Tssr12790	transcription start site region 12790	1422 bp downstream
Tssr12791	transcription start site region 12791	1545 bp downstream