rs223974836 SNP Detail

Summary

• ID
  rs223974836
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90653514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgggcctgg tgtgggattt tgaaacccca
  aagctcacct caagtgacac acatcctcca acaaaggcgt atctcctatt ttttcattac
  cctctccatc agacattcaa atctatgagc ccacagaggt cattctcatt caaaccacca
  M
  aGCAACTAAG GTATATCTCC GGCTCCCTTT TGTTATTGTT CATTTGCTTG AAAAAAGgcc
  taggctgacc ttgaactcct gattcttctg tctccatctc ttgatttctg ggattgcagg
  tctgtgccac tgggttgggc tGTCTTCCTG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391273	CHEV_2_90663327	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223974836					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90653514 () rs orientation: forward

Symbol	Name	Function Class
Agbl2	ATP/GTP binding protein-like 2	within coordinates
Rr373531	regulatory region 373531	within coordinates
Rr560574	regulatory region 560574	within coordinates
Rr560575	regulatory region 560575	605 bp proximal