rs223978358 SNP Detail

Summary

• ID
  rs223978358
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31352156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTCCTGG CCAAGAAACA
  AAAAGAAAAG TGTTCCATTC CCCCAGTGGA TTCTGAGGAA AACGGGTTTT TAAAAAAGCA
  GGTACAACTC TTAAGCTGCT GAAGGAGAGA CAAGCAGGGT CTGGAAGGAT CACTGGCTGT
  ACTCTGGTGA GTACTTACGC TGACATAGCT ATCCATTCTA CCAGAGGGAG TTGGTTTTTT
  K
  TTTTTGTTTT TGTTTTTTTT TAAAGCTTGG GCAAACTTAC CAGGTCTTAT TTAAATTGGG
  GATTAGATTT GCTTTCTATC TGCTCTACAA GAGTGAATTG GGGCGGGGGG GGGGATGTTA
  AAAAAAAAGA GTGAATTGGT TGGGTCAGTA ATAACATATA TACAACACCC CTCCCCACAA
  AATGCTAACT TGGCTGCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398003518	MGP_WTSI_17_31270127	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G	T	G	T	G	G	G	T	T	G	G	G	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223978358					SNP	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G	T	G	T	G	G	G	T	T	G	G	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398003518	MGP_WTSI_17_31270127	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31352156 () rs orientation: forward

Symbol	Name	Function Class
Rr341223	regulatory region 341223	46 bp proximal