rs223979463 SNP Detail

Summary

• ID
  rs223979463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34691717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGATGGTT TACATTGTAG
  AAACCAATTC ATTTAGACTA GAAATCACAT TCTAAGTTCT TGGAGGGATG TTTGAATTCT
  GTTTTTAAAA ATGAGAGTCA AGGGGCTAAA AAGATGACTC AAACAAACCA ACCAAGACAA
  ATTCTTTTGT TTTGTTCTTC TTTTTTTTTT CTTTAAGATT TATTTATTTT ACGTATATGA
  R
  TACACTGTTG CTATACTCGG ACACACCAGA AGAGGGCATC AGACCCCATT ACAGATGGTT
  GTGAACCACC ATGTGGTTGC TGGGGATTGA ACTCAGGACC TCTAGAAGAG CAGCAGTCAG
  TGCTCTTAAC CGCTGAGCCA TCTCTCCAGC CCCTCTTTGG TTTTTTTCGA AACAGGATTT
  CTCTGTGTAA CCCTGGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353602503	MGP_WTSI_2_34657225	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223979463					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353602503	MGP_WTSI_2_34657225	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34691717 () rs orientation: forward

Symbol	Name	Function Class
2700071L08Rik	RIKEN cDNA 2700071L08 gene	within coordinates
4930550L05Rik	RIKEN cDNA 4930550L05 gene	613 bp upstream
Cpgi11557	CpG island 11557	1741 bp distal
Cpgi11558	CpG island 11558	430 bp proximal
Gm57450	predicted gene, 57450	573 bp upstream
Gm75753	predicted gene, 75753	1404 bp downstream
Rabepk	Rab9 effector protein with kelch motifs	1793 bp upstream
Rr373029	regulatory region 373029	within coordinates
Rr555527	regulatory region 555527	1394 bp distal
Rr555528	regulatory region 555528	482 bp distal
Rr555529	regulatory region 555529	22 bp proximal
Rr555530	regulatory region 555530	83 bp proximal
Rr555531	regulatory region 555531	645 bp proximal
Rr555532	regulatory region 555532	805 bp proximal
Tssr17430	transcription start site region 17430	631 bp upstream
Tssr23651	transcription start site region 23651	1979 bp upstream
Tssr23652	transcription start site region 23652	1879 bp upstream
Tssr23653	transcription start site region 23653	1821 bp upstream