rs223979625 SNP Detail

Summary

• ID
  rs223979625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:16886285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTGTCC TGGAACTCAC
  TCTGTGACCA AGCTGGCCTC GAACTCAGAA ATTCACCTGC CTCTGCCTCC CAAGTGCTGG
  GATTAAAGGC ATGTGCCTCC ACCTGATGTG CTAAAGTCTC TCAGTAGTCA GAGCACCCAG
  AGTGACTGGG CTGTGGCTCC TTGTGTGTAG TCTAGCAGAG TGTGCCAAGG CTCTGTGCTC
  R
  GTCTCAGCAT CAAATGCACC AGGTGTGCAC ACCTGTAATC CCAGCAGGCT GCACAATTAG
  AATCTCAAGG TTAAATATGT CACCTCCAGC CACATACAGA CTGAAACTGA AGGGGTACAG
  AGGTTTCCAT GAGCTTTAAA AGGATGGCAG CTCTTTTTCC TAAAGCAGGG TCTCTCTCCT
  ACATAGCTCT TGATGACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395512666	MGP_WTSI_16_17068514	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223979625					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395512666	MGP_WTSI_16_17068514	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:16886285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8003	CpG island 8003	1258 bp proximal
Gm59807	predicted gene, 59807	578 bp downstream
Rr316811	regulatory region 316811	516 bp proximal
Rr324980	regulatory region 324980	915 bp proximal
Rr328576	regulatory region 328576	420 bp distal
Tssr137265	transcription start site region 137265	1706 bp upstream
Tssr137266	transcription start site region 137266	1799 bp upstream
Tssr137267	transcription start site region 137267	1826 bp upstream
Tssr137268	transcription start site region 137268	1843 bp upstream
Tssr137269	transcription start site region 137269	1860 bp upstream
Tssr137270	transcription start site region 137270	1902 bp upstream
Tssr137271	transcription start site region 137271	1921 bp upstream
Ypel1	yippee like 1	1275 bp upstream