rs223987272 SNP Detail

Summary

• ID
  rs223987272
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:95970355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTCTGGAA AGTACATGAA GCAGGAGAGT
  GGGGACTAGA ATATACAAAT GAGAAAAGCC CATTCACAAG GATGTGTCAT TGGGAGTAAT
  ACTTTGAAGA GGATCTGGGA TTTCAATCTA TCTGGCTGGC TGCctccctc tcctctctct
  C
  tctctctctc tctctctctc tctctctctc tctctctctc tctttccttc tccctctccc
  tccctccccc tctcAGTATA TTGtgtacat atttatctat acatttgtat atacatgtat
  gtgtacatgt atgtatgtat gcatatgtgt                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322811196	CHEV_8_97767627	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223987272					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95970355 () rs orientation: forward

Symbol	Name	Function Class
Cngb1	cyclic nucleotide gated channel beta 1	Intron
Cpgi20868	CpG island 20868	1224 bp distal
Rr368590	regulatory region 368590	1600 bp upstream
Rr668196	regulatory region 668196	within coordinates
Rr668197	regulatory region 668197	1123 bp proximal