rs223988732 SNP Detail

Summary

• ID
  rs223988732
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115218138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGGCAC TCCCTCAGAA
  GTGTGGGTAG AGGTGACAAG GAACAAGAGT GTATAGTGTG CTTCCTCATC CTTGAGGGTA
  CAGTCTAGGC CATACTGTCC AGGTCTCCAT CTGACCACGA AGGAGCCCTG GCTTTCCTCA
  CAAAGAGCCA GGGTGAGGAA GTTGAGGAAA GAGAAGGAAG GCAGAGTGGC TTAACTATTC
  Y
  AGCATGTGGA GGAAGGAAAG GCAGGAAACC ACCCCTAGTG TGATGACGTC ATGATGATGT
  CACTTGGGCC TATGACTGTC GTGCGCAGTG CAAAGTGCTT CAGATGTTCT ATGCAAACAC
  TTCTTTTTGG AGATAAATAC TACTAATGTT CCTGTTTTAT AGAAGCAGAA ACTAAGCACA
  GAGAGGCTAA GTAGTTGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323862363	CHEV_11_115188626	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223988732					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115218138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4123	CpG island 4123	1831 bp proximal
Otop2	otopetrin 2	within coordinates
Rr386706	regulatory region 386706	1159 bp downstream