rs223991077 SNP Detail

Summary

• ID
  rs223991077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7290560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACCTACC TTGTCAGTAC
  TTACAGGACC CTGGGGAACT ATTGGCTATT GGTAGACTCT GGAAGACCGG ATATCATTAT
  CTTCAGATAT GTACCCACTA GGGAAGCCAG CCAGGTCCAG TGCATAACTC CACAGTTACA
  GTCACATAAG CAACCCTTTT TAAACTGAGT ATGTCACAAA ACAAGAAGCC ATGAGTGTAG
  R
  AAAGGGAGGA CAGGGGTGAG AGAGAGACAA GAAAGTAAGG ATTAGAGCAG TCAGAATCCA
  TATATATAAA CATATATGAC ATTATTACAG AACAAACTTA ATTTATAAAA AACATTAAAA
  ACACCCACAT AAAATTAACC TAAGAAAATC AAAGATACAG ATTTTACTTC TTGGTGCCTA
  AATATCAAGT AATTTTTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325887811	CHEV_X_7001447	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223991077					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7290560 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	1333 bp upstream
Cpgi22567	CpG island 22567	1441 bp distal
DXImx8	DNA segment, Chr X, Immunex 8	488 bp proximal
Tssr162787	transcription start site region 162787	1380 bp upstream
Tssr162788	transcription start site region 162788	1347 bp upstream
Tssr162789	transcription start site region 162789	1325 bp upstream