rs223992373 SNP Detail

Summary

• ID
  rs223992373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:105572217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAATGCC TCATTAATTG
  TATTTAGAAT CAGATGATTT GAAATGACTC CAAATGGTTC TACCAGTTGT AATAGCTAGT
  ATTTCAAGCT TTTTCCTCGC TGAAAATCCA TAACGTAAAC GACTCAGCTG GCTTCCACTC
  TGCCTTTTTG CATGTGTCTT GGTCCCTTTA GGTTCCCATT AGCAGCACCC AGATTTCCTG
  Y
  TGGTCCAACT GCTGGTCCTC TAAGATGAAA TGAAGGATGT GGCAGTCCCA GAATTCCTGG
  TGCTGAGTTT GTAGAGTGAC GCAGCATGAA TGGATCACCC ATTGTGTGTC CAGTATCACT
  GTCAGGATTC CATTCTGGGT AGATTTCAAG AAGAAGCTGG CATCGACAAC TGTGACTTGC
  TCCACTGGTA TATTGACTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss375902295	MGP_WTSI_8_107369485	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs223992373					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375902295	MGP_WTSI_8_107369485	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105572217 () rs orientation: forward

Symbol	Name	Function Class
Ces2c	carboxylesterase 2C	1483 bp upstream
Gm33715	predicted gene, 33715	within coordinates
Matr3-ps2	matrin 3, pseudogene 2	51 bp downstream
Rr668766	regulatory region 668766	1137 bp proximal
Tssr79079	transcription start site region 79079	1476 bp upstream