rs223997061 SNP Detail

Summary

• ID
  rs223997061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34615345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGTCCTT TGGTTTGATC
  TGACAGGACT CTTTTAATGG AAAGACAAAG TTGGGTTGTT TGTGTGTGTG TGTGTGTGTG
  TTGGGGGGCA GATGGAACAT GCTCTTTGCT AATAAATGGA ACGGGAATTT GGAAAGCTGG
  AGAGAGGAGA AGCCAATGGG TTGGTCACGG TTGTAGGCCC TATCCGAGAA GTTTTGGAAT
  Y
  TGTACCTACA CAGACTGAAA GGGAGTCGCC CTATAAGTTT ATTGGGTGAG AACTGAAACT
  GGAAGCCAGG AGGACATGGA CATACTAAGA TCATAACAGG GAAAGCAGGC CTGGGAATTC
  ATGGGACAGG AAAGACTATG AAGACAGTGT ATCTCTTGTC TGAACCCCAT AAAGCTTGGA
  TATTTAACAG TGAGATGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374220020	MGP_WTSI_8_35211245	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223997061					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374220020	MGP_WTSI_8_35211245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34615345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	996 bp distal
Leprotl1	leptin receptor overlapping transcript-like 1	1452 bp upstream
Rr661963	regulatory region 661963	1169 bp distal
Rr661964	regulatory region 661964	668 bp distal
Rr661965	regulatory region 661965	941 bp proximal
Tssr76862	transcription start site region 76862	1854 bp downstream
Tssr76863	transcription start site region 76863	1824 bp downstream
Tssr76864	transcription start site region 76864	1807 bp downstream
Tssr80897	transcription start site region 80897	1604 bp upstream
Tssr80898	transcription start site region 80898	1473 bp upstream
Tssr80899	transcription start site region 80899	1439 bp upstream
Tssr80900	transcription start site region 80900	1423 bp upstream
Tssr80901	transcription start site region 80901	1381 bp upstream
Tssr80902	transcription start site region 80902	1178 bp upstream
Tssr80903	transcription start site region 80903	1125 bp upstream