rs223997167 SNP Detail

Summary

• ID
  rs223997167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132237879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCGGCGCA GAGGTTTTCA
  CGGCCCGGAG TGCCTCGGAA GTCCGCAGTG GCCAGCGCTG CTCGGGAAGC CGGCGCTCCT
  CACCATCCCC ACCACGGAAC TGCCAGCGCT CGCCCGGCTC TGTCAGCCCG CTGCGGTCCC
  TGGGGGAGGG CGGGGACACA AAAGTCCCAC GGCGCAGCCA ATCAGATGCC TGTTTCTCGG
  R
  GAGGCGGAGC CGACACCTCC CTCCGGAGCC AACCTTCCGT CCAATCAGCA TCGACAAGCG
  CCTGGGAACT CTGGGAGCTG TAGTTGGCCT CGCACAGATG CTGCAAACTT TTGCATGAAG
  GCGTTAGTCA GGTCTCTGGC AATACCAGAT GAGAGTGACA GCCCAAGGAG TCATTAGGGC
  TGCGTGATGA AACGGGACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363295648	MGP_WTSI_4_132066483	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223997167					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363295648	MGP_WTSI_4_132066483	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132237879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	within coordinates
Gm12981	predicted gene 12981	919 bp upstream
Rr377206	regulatory region 377206	within coordinates
Rr600990	regulatory region 600990	930 bp distal
Rr600991	regulatory region 600991	429 bp distal
Rr600992	regulatory region 600992	within coordinates
Rr600993	regulatory region 600993	1562 bp proximal
Sesn2	sestrin 2	112 bp upstream
Tssr43678	transcription start site region 43678	91 bp upstream
Tssr43679	transcription start site region 43679	77 bp upstream
Tssr43680	transcription start site region 43680	59 bp upstream