rs224002491 SNP Detail

Summary

• ID
  rs224002491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89245911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTCCTGT TTCCTAGCCC
  CACCTCACCC CTCCCACCCA CGGAGGGGTT ACAGAAATAA ACCACTAAAC TTAGGGCTTT
  TTACACGGGT GCTGGTTATC CAAACTCAGG TAAGCACTTT ACCAAGGCTG TCTTCTTTCA
  AATCCTATGT TGTACTTTAT TTTGTTTAAA ACAGGGTCTT AACACTAAAG TCTGGCTGGC
  Y
  TGGAACTTCT ATTATAAGCC AGGCTGGCCT CAGACTGGCA ATGATCCTCC TGCTCTATCC
  TCTCCAGTGC TGGGATTACA GCCACGGGGT TCATGCAGCA CCACCTAAGA GGGCCGGTTC
  GGTTTATGTT TAGATCTTGT CCTTTGTGTC TTCATTGGTT CAAGGTAGAA AGCCTCATTG
  AAGTCTGGGA GGTCAGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358810830	MGP_WTSI_3_89142526	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	C	C	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224002491					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	C	C	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358810830	MGP_WTSI_3_89142526	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89245911 () rs orientation: forward

Symbol	Name	Function Class
4731419I09Rik	RIKEN cDNA 4731419I09 gene	within coordinates
Adam15	ADAM metallopeptidase domain 15	1036 bp downstream
Cpgi13423	CpG island 13423	383 bp distal
Efna4	ephrin A4	576 bp upstream
Rr580049	regulatory region 580049	744 bp distal
Rr580050	regulatory region 580050	86 bp distal
Rr580051	regulatory region 580051	975 bp proximal
Tssr30091	transcription start site region 30091	1036 bp upstream
Tssr34115	transcription start site region 34115	625 bp upstream
Tssr34116	transcription start site region 34116	538 bp upstream
Tssr34117	transcription start site region 34117	1536 bp downstream
Tssr34118	transcription start site region 34118	1831 bp downstream