rs224006098 SNP Detail

Summary

• ID
  rs224006098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116388053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGCTCCT AATGTATAAA
  GAACAGGCAA ATTACTAATC TACAAGTCTA AACAAACAAA CAAAAATTGT TTCTAAGTTT
  CTTCCCCATG CATTCACAAG TGGTTATCGT TCAAAAACAA TAACTATAAT TAATTAGAAC
  CCAGTTAATA AAACCTAGTG ATCTTTTTCA AGCACTCCTT TATAAAAATA ATCACTTCCC
  Y
  TGAGGATGGG GGACTAGCGG AAGGAAGGAT GAGTGTAAGG GTCTCTGAGA CAGCAGAGGG
  AGCTTTTAGT ACAAGAAAGC AATGCTCCTC GGGGGCTCCT CGCGGCTCCG AGCGGTGGGC
  AGAACTGCAT TTACTTAAAT CCATGGGACG GAAGCAGGAA CCTGTCAAAG GGGCGAGACT
  GGGGTCCAGC ACCCACAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895806	CHEV_3_116297322	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224006098					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116388053 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	72 bp proximal
Rr397965	regulatory region 397965	359 bp upstream
Rr583746	regulatory region 583746	46 bp proximal
Rr583747	regulatory region 583747	343 bp proximal
Rr583748	regulatory region 583748	424 bp proximal
Rr583749	regulatory region 583749	617 bp proximal
Rr583750	regulatory region 583750	785 bp proximal
Sass6	SAS-6 centriolar assembly protein	578 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	555 bp upstream
Tssr35316	transcription start site region 35316	412 bp downstream
Tssr35317	transcription start site region 35317	444 bp downstream