rs224006953 SNP Detail

Summary

• ID
  rs224006953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90172007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTCTTCT GAAGCCCTGG
  GTAAGGAGAG GCTGTTGTCC CAAGTCACAG TTGTTTCTGT TAGAAAATCC TCCCCTCTCC
  TGGAGGAGGC TATTGCCAGT GTTGATGCTT CTAGAGAGAA GTAAGCAGGC CTAGCTGGCT
  TACTTGGTTT ATGTTTGGGG GACCTAAGCA ATCTCATGTT CTGAGGACTG TATGTCGATT
  Y
  ATCCATTTCA CTGCTCCATT TGGGTTTAAC GCAATAGATC CTTGGGAGAC AACCATGTTC
  CACGAAGGCT TTGTTAGACT TCACCCAGCA TAGTGAAAGG AGTGCTACAC CTCCACTATT
  CGGCTTCATG CCTTTCTTCC TCTTTTTCAA TGTTCTTGTC ATTTCTCGAA AGAAGAACTG
  AGAGTTTCTG GCTCTGGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358829456	MGP_WTSI_3_90068622	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224006953					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358829456	MGP_WTSI_3_90068622	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90172007 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13456	CpG island 13456	220 bp proximal
Crtc2	CREB regulated transcription coactivator 2	575 bp downstream
Dennd4b	DENN domain containing 4B	485 bp upstream
Gm65083	predicted gene, 65083	1283 bp downstream
Rr397807	regulatory region 397807	76 bp upstream
Rr580320	regulatory region 580320	within coordinates
Rr580321	regulatory region 580321	398 bp proximal
Rr580322	regulatory region 580322	496 bp proximal
Rr580323	regulatory region 580323	696 bp proximal
Rr580324	regulatory region 580324	1686 bp proximal
Rr580325	regulatory region 580325	1825 bp proximal
Tssr30184	transcription start site region 30184	267 bp upstream
Tssr30185	transcription start site region 30185	1219 bp upstream
Tssr30186	transcription start site region 30186	1255 bp upstream
Tssr30187	transcription start site region 30187	1792 bp upstream
Tssr30188	transcription start site region 30188	1807 bp upstream
Tssr34202	transcription start site region 34202	808 bp downstream
Tssr34203	transcription start site region 34203	1693 bp downstream