rs224010748 SNP Detail

Summary

• ID
  rs224010748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146358820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACATAGG CTCTCTCCCC
  TGGACTTGTG AATAGAGTGA AGCAAACCGT TTCTATCGCT CTCCTCAGAC TGTTGCTCTG
  AGGAAGAGGC AACTATGCGC TCCGCCATGC TCTCACCTGT TTGCCACAGT GGTCTCCTTA
  CACTGAGAAC CTACTCCTGA CATGCCAGCA GCTCAACAAG CCCCTCCCTG TCTTCTCTCC
  Y
  TCTTACAAGT CTACCTTTCA TTTCAGTGCT CTGTTCTGCA GTGTTACAAG ACCCTTCAAT
  CCTATGTGAG GCCCATGGTT GACAGGGGAG CCATTCTTCC ACTAGTCCTT ACAACACAGC
  CTGCAGACTA ACAGACTTCT TGTTCCCATG CCACGAGCAC CCAAGCCAGG GGAGCCTGTG
  ATTTTGTGTC TTTGATTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss360123562	MGP_WTSI_3_146316029	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs224010748					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360123562	MGP_WTSI_3_146316029	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146358820 () rs orientation: forward

Symbol	Name	Function Class
4930503B20Rik	RIKEN cDNA 4930503B20 gene	1748 bp upstream
Gm16325	predicted gene 16325	1350 bp downstream
Rr375877	regulatory region 375877	1777 bp upstream
Samd13	sterile alpha motif domain containing 13	within coordinates
Tssr1086	transcription start site region 1086	1733 bp upstream
Tssr1087	transcription start site region 1087	1726 bp upstream
Tssr1088	transcription start site region 1088	1692 bp upstream
Tssr36050	transcription start site region 36050	1767 bp upstream
Tssr36051	transcription start site region 36051	1738 bp upstream