rs224037242 SNP Detail

Summary

• ID
  rs224037242
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:57956610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGGCCG CGCCTAGACC
  ACGCCCCCAA GAGGTGGGGC GGTTTTCCAG GGGGCGGAGC CAGAGTCGGC TACTAGTGCA
  GCCTGGGGAC TGTCCTAGCG CTGGCCTCAC TCCTGGCTTC CCCGCCCCAC TCTAAGCTGC
  CGAACAAGAA CCTTAGTTTA TAAGGGGCGG AGCTAGCACA GGCTCCTGGA GCAGCTTCGG
  T
  TTTTTCCAGG CTCCAGACGC CGCGCGGCAG CTACCCCTAA GAGCCAACTT CCAGCTGCCT
  CAAGGGCACT TTAACAGCGA ACAGCGCCGG GGTAGATCAC GGTCCTCTCT CACACCGTAG
  AGTCCTTCTG TAATCACACT GCCCATGCCC CAAACTAGAC CTAAGTCAGA TACTTCCAGA
  TTGGGGCTGG GGACAGTCCC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321136106	CHEV_4_57969482	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224037242					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57956610 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14335	CpG island 14335	within coordinates
Gm35344	predicted gene, 35344	142 bp upstream
Gm57068	predicted gene, 57068	within coordinates
Rr398279	regulatory region 398279	1 bp downstream
Rr592848	regulatory region 592848	210 bp distal
Rr592849	regulatory region 592849	824 bp distal
Rr592850	regulatory region 592850	within coordinates
Rr592851	regulatory region 592851	162 bp distal
Rr592852	regulatory region 592852	124 bp proximal
Rr592853	regulatory region 592853	625 bp proximal
Tssr1183	transcription start site region 1183	252 bp upstream
Tssr1184	transcription start site region 1184	186 bp upstream
Tssr37396	transcription start site region 37396	12 bp upstream
Tssr37397	transcription start site region 37397	314 bp upstream
Tssr41866	transcription start site region 41866	312 bp upstream
Txn1	thioredoxin 1	199 bp upstream