rs224038177 SNP Detail

Summary

• ID
  rs224038177
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:61871561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTGACTGT CCTAGCAGGT
  GTTCCCAGAG AGAGAGGCGA TGGCATCTAG TAGTAACTGG CTTTCTGGAG TGAATGTCTT
  CCTGGTGATG GCGTACGGGA GCCTGGTATT CGTACTGCTG TTTATTTTTG TGAAGAGACA
  AATCATGCGC TTTGCAATGA AATCTAGAAG GGGACCTCAT GTTCCTGTAG GACACAATGC
  M
  CTCAAGGACT TAAAAGAGGA GATCGATATC GACTATCCAG GGTTCAAGAT ATCAAGTATG
  AACCCCAGCT CCTTGCAGAT GATGATACCA GACTACTGCA GCTGGAAACC CAGGGGAATC
  AAAGTTGCTA CAACTATCTG TACAGAATGA AAGCTCTAGA TGCCTTCCGT GCCTCTGAGA
  TCCGGTTCCA TGCTGAAGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LP/J	NZO/HlLtJ	PL/J	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J
ss388840988	MGP_WTSI_13_61825107	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LP/J	NZO/HlLtJ	PL/J	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J
rs224038177					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388840988	MGP_WTSI_13_61825107	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61871561 () rs orientation: forward

Symbol	Name	Function Class
1700028E11Rik	RIKEN cDNA 1700028E11 gene	within coordinates
Gm9595	predicted gene 9595	Intron
Gm49357	predicted gene, 49357	within coordinates
Gm49400	predicted gene 49400	within coordinates