rs224038310 SNP Detail

Summary

• ID
  rs224038310
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29230175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATCTGCG AGCCAGTGCC
  TGCTAAGAAG GCTGGATGCT TGTGTACAAC GGCAGGACTA ATTGTTGCTT ACTGCGAAAA
  TGGCAGTGTT GAACTTTTCC TGTTGCTGTG GGAGAGTAAT TGGGTGGTAT TTATTGTGTC
  TCTTGGATCC TTAAAGAAGC GGTCTTTGTT GGTTTTACAG TGTGGTCTTG CAGAGGAAAA
  M
  AATAAGTCGT CTCTTTCTCC CCCTTTCTCC CCAGTCTTAA TTTTCAAGGA ATTGAAATAA
  CCTGTTGAGG GAACAAATTG GTTGTTTTTG CTGGGTTTCT GCTGCCACAT TGAATGCTTC
  CTGTATTCAC CTGCTTGCTT TGTTGGTTGA TTGCTTTCCG GTGGTTACTA GTCTATCAGG
  GGAAACTCCT TTTCCCTGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325789623	CHEV_19_29327265	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224038310					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29230175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	320 bp distal
Gm41829	predicted gene, 41829	450 bp upstream
Gm59364	predicted gene, 59364	1274 bp upstream
Jak2	Janus kinase 2	within coordinates
Rr405910	regulatory region 405910	1071 bp upstream
Rr546087	regulatory region 546087	1448 bp distal
Rr546088	regulatory region 546088	937 bp distal
Rr546089	regulatory region 546089	1152 bp distal
Rr546090	regulatory region 546090	324 bp distal
Rr546091	regulatory region 546091	within coordinates
Rr546092	regulatory region 546092	1195 bp proximal
Rr546093	regulatory region 546093	1965 bp proximal
Tssr155780	transcription start site region 155780	1110 bp downstream
Tssr155781	transcription start site region 155781	921 bp downstream
Tssr155782	transcription start site region 155782	908 bp downstream
Tssr155783	transcription start site region 155783	874 bp downstream
Tssr155784	transcription start site region 155784	462 bp downstream
Tssr155785	transcription start site region 155785	333 bp downstream
Tssr155786	transcription start site region 155786	290 bp downstream
Tssr155787	transcription start site region 155787	185 bp downstream
Tssr158749	transcription start site region 158749	670 bp upstream