rs224040600 SNP Detail

Summary

• ID
  rs224040600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23706039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTCATTA ATGACAGATG
  CGATAAAGTG ATGAGACTGT ATTTTTAAAC AGTCTAATTA AAAAGGCAAA TTAAACTAAT
  GTAATTCTCC TCCTCCTCCT CAAAAAAAAA AAAAAATCCC GAAATTCAAA TTATTTTTCC
  CTGACCCGAC TCATTGACAG GTACACAGCA TAAAAATCTA TCTCAAACTT ACAGTAGGTA
  Y
  GACGAGGTGG CCGAGTGGTT AAGGCGATGG ACTGCTAATC CATTGTGCTC TGCACGCGTG
  GGTTCGAATC CCATCCTCGT CGTTCAGTTT ACTCATGGCT CTCTGAGCCT GAGGTTTTAG
  CACCGGGCGG TGAAGAACAT CTGTGTGCTT AAAACTTCAC AAGTGTTTCA TCTTGTTGAA
  ACACTTTCTC CTTGTTGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324289678	CHEV_13_23613738	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224040600					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23706039 () rs orientation: forward

Symbol	Name	Function Class
Gm61424	predicted gene, 61424	within coordinates
n-TSgct4	nuclear encoded tRNA serine 4 (anticodon GCT)	1 bp upstream
Rr281116	regulatory region 281116	1638 bp distal
Rr281117	regulatory region 281117	within coordinates