rs224046246 SNP Detail

Summary

• ID
  rs224046246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151838293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGGGAT AGCATTGGAA
  ATATAAATGA AGAAAATACC TAATTTTTTT AAAAAAAGGA CACATCAGAA AGTAACAGAT
  TAGGGACTGA AGAGATGGCT CCGACGTTAA AAGCATTGGC TGCTCTTGCA GAGGACCCAG
  GTGCAATTCC CACATGGCAC TTACAGCCAT CTTTATTCCA GATCAGGTGA TCTGACACCC
  Y
  TTCTAGCCTC TGCAGGCACC AGGCATGCAC AGAGGTTCGT GCACTACAAG TACCCACACA
  CACATTTTTG TTGTTGTTGT TGTTGTTGCT GTTGTTGTTG TTGTTTTTGT TTTTGTTTTT
  CAAGACAGGG TTTCTCTGTG TAGCCCTGGC TATCCTGGAA CTCACTCTGT AGACCAGGCT
  GGCCTCAAAA TCAATAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028217	CHEV_3_151795620	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224046246					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151838293 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587462	regulatory region 587462			1242 bp distal
Rr587463	regulatory region 587463			877 bp proximal